16
votes
COVID19 - Coronavirus case data (country summary data)
The JHU dashboard you linked has their data available as CSV on Github:
https://github.com/CSSEGISandData/COVID-19/tree/master/csse_covid_19_data
in particular these CSV files, which contain all ...
- 17.5k
12
votes
Accepted
Age, Weight and Height dataset
Try the Demographic and Health Survey (DHS). They have what you are looking for, for a large set of countries. On top of that you will in part be able to identify family ties, and you can even ...
- 1,169
11
votes
Accepted
COVID19 - Coronavirus case data (country summary data)
Index of Countries (community wiki)
Global
Johns Hopkins University
WHO
ECDC
OurWorldInData
Worlddata.AI
Europe
Belgium
Germany and another Germany
Switzerland
Spain
Italy
United Kingdom
United ...
9
votes
Age, Weight and Height dataset
Okay, this is a very specific dataset for the !Kung San people, but it has height, weight, sex, and age fields. Reference was found in McElreath:
"The data contained in data (Howell1) are partial ...
9
votes
COVID19 - Coronavirus case data (country summary data)
The Italian data from the Civil Protection Agency is updated daily at
https://github.com/pcm-dpc/COVID-19
There are a few data sets (CSV) in there. Aggregated data is published at http://...
- 211
9
votes
Dataset on coronavirus government countermeasures (per country/region/city?)
We started a worldwide crowdsourcing data collection on policy measures, including lockdowns at the admin1 level (region) and the country level. Currently we coded data for ~13 countries and are ...
- 1,169
8
votes
Disease and Symptoms Hierarchy
The NIH has published the UMLS database, which consists of more than 7 million concepts, diseases and symptoms. It's a very wealthy resource. The license is pretty permissive if you are working in ...
- 181
7
votes
Physician notes with annotated PHI
1) i2b2 2006 Deidentification and Smoking Challenge's data set:
NLP Data Set #1B: 889 de-identified discharge summaries with
de-identification challenge annotations, training and test sets and
...
- 7,700
7
votes
Dataset on coronavirus government countermeasures (per country/region/city?)
At this point Wikipedia will have most of the information but not yet machine readable. For a broad data-request on global lockdowns of varying degree, and for an ongoing event, I can't image a ...
- 17.5k
6
votes
Age, Weight and Height dataset
Here is a set of individual weights and heights for 25,000 children in Hong Kong. There is no age or gender information, though, which does limit its usefulness.
From the same site, there is a table ...
- 316
6
votes
Accepted
World dataset of hospitals
healthsites.io is an open data effort to map healthcare entities (hospitals, clinics, pharmacies, private practices, etc.) worldwide. The data is drawn from OpenStreetMap and at a minimum provides ...
- 1,214
6
votes
COVID19 - Coronavirus case data (country summary data)
I successfully parse WHO situation reports and convert them to CSV, from march 1. Older reports are too unstructured.
See here: https://github.com/gibello/whocovid19 (reports in data/csv).
On the site,...
6
votes
COVID19 - Coronavirus case data (country summary data)
The CDC has US-wide cases, per date
https://www.cdc.gov/coronavirus/2019-ncov/cases-updates/testing-in-us.html
It's an HTML table, and I haven't found a more machine readable source. But with Python ...
- 17.5k
6
votes
COVID19 - Coronavirus case data (country summary data)
German data can be found here:
https://www.rki.de/DE/Content/InfAZ/N/Neuartiges_Coronavirus/Fallzahlen.html
- 221
6
votes
COVID19 - Coronavirus case data (country summary data)
German Covid-19 data from RKI (Robert Koch-Institut) on the state (Bundesländer) and county (Kreise) level can be found here.
Data on the county level include patient information such as age group and ...
- 206
6
votes
Dataset on coronavirus government countermeasures (per country/region/city?)
What about this database? It includes government measures...
ACAPS COVID-19: Government Measures Dataset
The COVID-19 Government Measures Dataset puts together all the measures implemented by ...
- 161
6
votes
COVID-19 Clinical Data or Statistics
The Anthem XPRIZE Pandemic Alliance has pledged the availability of such de-identified data including data on previous outbreaks (i.e. swine-flu, influenza, SARS etc.) It is unclear, however, how soon ...
- 443
5
votes
2014 Ebola outbreak dataset
Sierra Leone, Liberia, and Guinea data can be downloaded as CSV or JSON from WHO
- 51
5
votes
De-identified patient data
MIMIC initiative provides a dataset (deceased patients) that has vitals, Diagnoses, Medications and several other domains.
Updated link (2021)
https://mimic.physionet.org/gettingstarted/demo/
Original ...
- 720
5
votes
Open datasets on medicine/drugs and its uses in treatment
Check out RxClass from the US National Institute of Health's National Library of Medicine: https://mor.nlm.nih.gov/RxClass :
Example web UI query for all drugs that may_treat FEVER https://mor.nlm....
- 5,174
5
votes
Accepted
Deaths by falling coconuts
National Electronic Injury Surveillance System (NEISS) is a great resource for free-text details of emergency-room visits, including fatalities.
Unfortunately (for you), years 2009-2015 show cutting-...
- 17.5k
5
votes
How do I find out how much doctors get reimbursed by medicare for certain procedures?
From cms.gov
One important factor in these calculations seems to be the RVU, or Relative Value Unit.
The real calculation I found is here, near the bottom of the page. Search for [physician fee ...
- 667
5
votes
Age, Weight and Height dataset
For the United States, the Behavioral Risk Factor Surveillance System (BRFSS) contains this information on over 400,000 adults every year. According to the website, the BRFSS is a cross-sectional ...
- 603
5
votes
COVID19 - Coronavirus case data (country summary data)
Several places for data of Switzerland Covid-19 cases
quasi-official: https://github.com/openZH/covid_19
unofficial: https://github.com/daenuprobst/covid19-cases-switzerland
Comparison between ...
- 17.5k
5
votes
COVID19 - Coronavirus case data (country summary data)
Spain data can be found here:
https://www.mscbs.gob.es/profesionales/saludPublica/ccayes/alertasActual/nCov-China/situacionActual.htm
- 221
5
votes
COVID19 - Coronavirus case data (country summary data)
My take on UK data: https://github.com/sainnr/covid19-uk-data-capture. The goal is to represent daily updates published by UK official bodies in the machine-readable format.
Currently, it consists ...
- 151
5
votes
COVID-19 Clinical Data or Statistics
I've also found a fairly detailed dataset on github
https://github.com/beoutbreakprepared/nCoV2019/tree/master/latest_data
This is quite exciting as it holds the following data
Demography: age,sex
...
- 1,104
4
votes
Where can I find a data set of US Individuals?
Integrated Public Use Microdata Series (IPUMS USA) is a pretty amazing data source. It is one of the largest public tools for individual level data in the world. It allows you to extract data from ...
- 233
4
votes
Accepted
Current biohazard/disease outbreak dataset
CDC
CDC Current Outbreak List:
http://www.cdc.gov/outbreaks/
Multistate Foodborne Outbreaks - Foodborne outbreaks listed by year
http://www.cdc.gov/foodsafety/outbreaks/multistate-outbreaks/outbreaks-...
- 11.8k
4
votes
Accepted
Medical Terminology in Patient Medical Records - Public Data Sets
The MIMIC-III dataset would be well suited to the kind of natural language processing (NLP) study that you are interested in doing. MIMIC-III includes deidentified nursing progress notes, imaging ...
- 1,446
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