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Questions tagged [pubmed]

PubMed comprises around 26 million citations for biomedical literature from MEDLINE, life science journals, and online books.

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107 views

MEDLINE®/PubMed dataset as a relational database (e.g., MySQL)

I am looking for a way to obtain the MEDLINE®/PubMed dataset (i.e., metadata of PubMed papers) as a relational database (e.g., MySQL). The MEDLINE®/PubMed can be downloaded as XML files, but I would ...
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vote
0answers
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Given a PMID, how can I get the list of PMIDs of papers citing it?

Given a PMID (=PubMed identifier), how can I get the list of PMIDs of papers citing it? Dataset, API, or any other solution is fine.
2
votes
1answer
74 views

How does PubMed obtain papers' metadata?

I wonder how PubMed obtains papers' metadata. In particular, I am interested in the metadata used for these filters: http://www.ncbi.nlm.nih.gov/pubmed?term=%22Review%22[pt]
2
votes
0answers
17 views

Linking PMIDs with ORCID iDs

I am looking for a dataset or API which would give the list of ORCID iDs (=Open Researcher and Contributor ID) given a PMID (=PubMed identifier).
6
votes
1answer
652 views

Why are some PubMed IDs missing?

PubMed IDs (a.k.a. PMIDs) seem to have been assigned sequentially: https://www.ncbi.nlm.nih.gov/pubmed/1 https://www.ncbi.nlm.nih.gov/pubmed/2 https://www.ncbi.nlm.nih.gov/pubmed/3 https://www.ncbi....