Questions tagged [medical]

Healthcare, the body, medicine, medical research, pharmacology, anatomy, etc

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Terminologia Anatomica in structured form?

The Terminologia Anatomica can be browsed at https://ta2viewer.openanatomy.org/ and downloaded as PDF at https://fipat.library.dal.ca/ta2/ but is there a publicly available version in a structured ...
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Where to find time-series datasets with caloric intake, insulin levels, weight and height?

Where can I access time-series datasets with caloric intake, insulin levels, weight, and height? Looking for data on people, so having access to age, and country/city, would also be of relevance. ...
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patient and credit card dataset

I am trying to do some experiments with data science algorithms and looking for some sample datasets. For example, I am looking for a sample patient dataset. For example, a dataset that each row is a ...
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I am looking for temporal EHR dataset

I am looking for temporal EHR dataset for my project work. I know some hospital website allows to download the dataset. But it requires permission and the dataset huge which will be difficult to ...
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Need COVID-19 data at patient level with demographics of where they live

It might sound like a ridiculous question. But would like to know if there is any data set on covid 19 that details the type of residency. Mainly, covid positive lived in an independent or multi-...
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How to get serum creatinine and ejection fraction for patients cohort?

I need first serum creatinine values and the first echodiagram text (to extract ejection fraction from later on) for a patients cohort from the ICU. This is what I have so far: -- SERUM CREATININE ...
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Which databases will show me the prevalence of a given ICD-10 diagnostic code?

For example, suppose I want to know how many people have Marfan syndrome with cardiovascular stuff (ICD-10 code Q87.41) What database could I use that would give me this information? This question ...
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Healthcare reinforcement learning datasets?

I was hoping for some datasets that could be modeled with eg a Markov Decision Process.
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a single clearing house for state license #'ers for dr's

If I want to get the state license and expiration date for a given doctor, anywhere in the United States, in-so-far as I know, you have to go to each state's website and get that info. Like for TX ...
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San Francisco County influenza cases by week/month, 2005-2021

I'm looking for a dataset that gives me a weekly or monthly count of new influenza cases in San Francisco, from January 1, 2005 up to January 1, 2021. Does such a dataset exist?
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Long-term care insurances that satisfy the requirements to opt out from the long-term care payroll tax in Washington state

I'm looking for a data set that contains all long-term care insurances that satisfy the requirements to opt out from the long-term care payroll tax in Washington state. I'd prefer if the dataset ...
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2 votes
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UVA and UVB radiations every hour over a year in a given city

I'm looking for a dataset that contains how much UVA and UVB radiations a given city received every hour over a year. E.g.: 0.0 kJ/m² UVA and 0.0 kJ m² UVB between 00 and 01 AM on 2020-01-01 in ...
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Where can I find the list of insurance carriers who offer Medicare Supplement (Medigap) plans by state AND enrollment numbers?

I can download a list by state of the insurance carriers who offer this sort of insurance plan from the Center for Medicare Services, but this list doesn't include the number of people enrolled in ...
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Where can I find a dataset of drugs and corresponding indications (diseases / conditions)?

I'm Conducting a correlation-study for drugs repurposing and I'm trying to minimize cause-effect bias by knowing which drugs are intended to which disease (condition/indication). Otherwise, I'm ...
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Discharge Summary Clinical reports with diagnoses

I am doing research on clinical reports (Discharge Summary) I cannot find any dataset that has Discharge Summary and ICD diagnoses I already have MIMIC III dataset, but one dataset is not enough I ...
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Drug side effect dataset

Does anyone knows where I could find a dataset which lists the known side effects for every drug. Initially, I've found SIDER (http://sideeffects.embl.de/) and OFFSIDER (http://tatonettilab.org/...
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Finding clinical trial datasets in R

I am working on a project and looking for R packages which contain free datasets from clinical trials. A good example is the AIDS Clinical Trials Group Study 175 (ACTG 175), whose R package can be ...
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Linking investigational drugs to name of owning company

I see that AACT (https://aact.ctti-clinicaltrials.org/data_dictionary) has investigational drugs. I find the table/field: keywords/name to be useful for finding investigational drugs. I'm wondering ...
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Sentiment analysis applied to reviews of pharmaceutical drugs

I'm looking for a dataset for sentiment analysis applied to reviews of pharmaceutical drugs. I.e. a set of sentences from reviews of pharmaceutical drugs labels with a score indicating their sentiment....
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Dictionary of life sciences or medical terminologies

I'm exploring available open-source dictionaries with medical terminologies. I found this but it's limited. Currently focusing on how to make use of NIH. However, the challenge is that I'm running ...
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COVID-19 cases broken down by whether the individuals are vaccinated, and if so, with which vaccine

I'm looking for a dataset that contains number of COVID-19 cases broken down by whether the individuals are vaccinated, and if so, with which vaccine. I'd prefer if the COVID-19 cases broken down by ...
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Why # positives and % positives align, and why use former?

Background: the Dutch government publishes certain Covid-related metrics via a dashboard (https://coronadashboard.government.nl/) and I have a few questions about the underlying data science. NUMBER ...
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DailyMed RESTful API Help

I am new to utilizing a data API and need some help. I am looking for a way to look up a specific generic drug and then filter so that I am seeing only original labels (not repackaged) and I am seeing ...
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Various sources for self-reported heights of adults

I'm looking for various sources (Global: US, UK, Europe) of adult height data. And it should be self-reported (meaning the person reports their own height, and not that a doctor measures them).
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How many countrywide weekly mortality datasets are available?

It is a major topic of interest during the covid pandemic to analyse excess mortality. And it is particularly helpful to look at weekly death counts as the resulting year-year comparisons of weekly ...
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Rest APIs or Database for Vaccinations and Allergies

I am doing research and looking for an API for Vaccination and Allergies. I found some link like https://data.cdc.gov/ where I can the information but I am looking for something which has all ...
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Dataset of health vitals from wearables

Are there any places where I can find a combined dataset for health vitals like Body Temperature, Blood Pressure, Respiration, Glucose, Heart Rate, Oxygen Saturation, Electro Cardiogram etc. I am ...
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Medical Risk Factor Datasets - heart disease, metabolic syndrome diet

I am interested in learning data and in understanding health. I have listened to a lot of Robert Lustig, M.D. the past several months. I know about Framingham's study and the China Study and Ancel Key'...
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3 votes
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How can one interpret the NVSS Mortality Multiple Cause-of-Death data sets?

I've downloaded the past 6 years of data from the NVSS for Mortality Multiple Cause-of-Death files. I'm a bit perplexed however, because the user's guide does not seem to provide any understandable ...
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Is there a open source database of licensed physicians in the US by state

I am creating a database of preferential physicians for special needs families - is there an open-source database of licensed physicians in the US by the state?
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Elder patient dialogue corpus

I am looking for a corpus with dialogue between elderly patients (in a nursing home, hospital, their houses) and caregivers (nurses, doctors, family members). Do you know of anything like this?
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Where to find large survival dataset with at least one time dependent variable?

Looking for a large dataset for survival analysis where at least one of the variables is time-dependent. For example, this a sample dataset: time status sex age year thickness ulcer 1 10 ...
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Estimate drug costs by RxCUI from NADAC data

I'm trying to estimate Rx costs using the National Average Drug Acquisition Cost (NADAC) dataset. Essentially I lookup drugs using the RxTerms API, which provides RxCUIs, strengths and forms and ...
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2 votes
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Travel restrictions or quarantine regulations due to Covid19 (machine readable, if possible)

I'm looking for datasets (or webpages) from one or many countries that lists travel restrictions and quarantine requirements for travelers entering the country. For example, lists that countries ...
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1 answer
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COVID-19 - Austria - historical data of new infections per state

I'd like to analyze the development of COVID-19 cases in Austria by state, in respect to the designation of "risk areas" as defined by the Federal Foreign Office of Germany. According to ...
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1 vote
2 answers
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Voice audio dataset labeled with influenza-like illness or not

I was doing a machine learning project, assigned by my advisor. The project description is as follows - given an audio sample of a patient, we want to predict whether that patient to whom the audio ...
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1 vote
2 answers
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Where can I get statistics about illness relationships with vitamins and minerals deficiency?

I would like to know where I can get a credible source of information about health. I read a lot of information about what causing an illness a lot of information that somebody else claim its wrong, I ...
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7 votes
1 answer
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Can I aggregate and reformat publicly available data for teaching?

I work and teach in a field where public data is scarce (anatomical MRI processing). I planned to organize a few practical works for students this semester. I had a pretty hard time gathering publicly ...
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Crosswalk / Equivalence Mapping from HCPCS (Devices) to FDA Product Code

Is there any available mapping between the HCPCS-II codes associated with medical devices and the 3-letter FDA "Product Code"? So to be excruciatingly obvious... The FDA Product Code for ...
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Why do I get a "Identifier not found in PMC" error message when trying to convert a valid DOI that has a PMID?

I read on https://pubmed.ncbi.nlm.nih.gov/30265128/: PMID: 30265128 (PMID=PubMed identifier) DOI: 10.1164/rccm.201806-1083IM However when trying to convert the DOI 10.1164/rccm.201806-1083IM ot its ...
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Medical data sets

I am searching for medical datasets that include taking the dosage of a particular medicine and measurements of Bioindexes such as blood sugar or everything else. Can you guide me if you know?
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1 vote
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How to get List of all diseases , categories , causes and symptoms?

I am looking for a medical dataset. I Need a list of all diseases, symptoms, categories, causes, body part relations. I don't know how to get it. Actually I've found some semantic sources like DO ...
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Number of Hospitals in the US with emergency departments

How many US hospitals have emergency departments?
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2 votes
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Yelp Academic Dataset

I heard about the Yelp Dataset, I did not download it yet, I just need to know if the reviews about a specific service on this dataset are identified by the unique id of the person who wrote the ...
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Using data on healthsites.io for small project

healthsite gathers data for open and complete approach to creating a global health facility data set by leveraging the power of OpenStreetMap question: in corona - pandemic times, can we takt the ...
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3 votes
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Dataset for a Healthcare RecSys

i want dataset that contains ratings and/or reviews of doctors/Physicians by their patients, both doctors and patients must be identified by unique ID.. Is there any public dataset i can use for my ...
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2 votes
1 answer
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Data about drugs/medicine and outcomes

I'm am looking for some datasets that contain data about a specific disease - any disease (preferably with several known treatments). I need such datasets, that contain information about the patients, ...
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1 vote
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Queensland Australia Hospital and Health Service Boundaries Covid-19 Database

I'm searching for a database (or spreadsheet) containing the number of Covid-19 cases for every Hospital and Health Service boundaries in Queensland, Australia. That is, the cases in Queensland ...
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ECDC/PHE covid data clash

12 April's new daily confirmed cases for UK seem to be dramatically different: ECDC says 8719 (https://ourworldindata.org/grapher/daily-cases-covid-19?country=GBR), while PHE says 84279-78991=5288 (...
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5 votes
2 answers
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Data of covid-19 test per day, per country

Similarly to a recent question on lockdowns, wonder if there is a machine-readable dataset of covid-19 testing per country/state/region. Testing rate largely affects the official number of infected, ...
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