3

Just updated my mimic-code directory after some changes were made yesterday to the postgres configuration files. Reimporting the data and getting the following error for the admissions table:

postgres=# \set admissions_csv :mimic_data_dir 'ADMISSIONS_DATA_TABLE.csv'
postgres=# COPY ADMISSIONS FROM :'admissions_csv' DELIMITER ',' CSV HEADER;
ERROR:  invalid input syntax for type timestamp: "CHEST PAIN\CATH"
CONTEXT:  COPY admissions, line 2, column edregtime: "CHEST PAIN\CATH"

I know this is because the data I'm using is missing the edregtime column - is the appropriate data for these updates accessible on physionet?

3

It looks like you are trying to load MIMIC-III (v1.1) data using the MIMIC-III (v1.2) build scripts. edregtime is a new column that was added between v1.1 and v1.2.

Major issues addressed, including additional data made available:

...

#151 - The time of emergency department registration and exit has been added to the admissions table, where available.

The latest version of the data can be downloaded from the MIMIC-III project page on PhysioNet.

| improve this answer | |

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy

Not the answer you're looking for? Browse other questions tagged or ask your own question.